I use Sonarr, but it does mess up sometimes for shows even when you mark it as an anime to use absolute numbering. It most often happens with older shows that have lots of OVAs that are sometimes listed as episodes and sometimes listed as specials, depending on the database. So, if you are having Sonarr manage your downloads, then it can grab the wrong episode if its database (I think TVDB) and the release (usually using MAL numbering) disagree.
I don’t have a solution for you, but I will be watching this thread. Currently, I use Sonarr for library organization, but it doesn’t always work well with anime due to title differences and differences between how seasons/specials are numbered in different databases. So, Shoko was on my radar to try out at some point since it uses anidb.
I used to have my docker updates done automatically. However, as the services I used to run just for myself have started to be used by other people (family, friends), I am less tolerant of having things break. So, instead of something like watchtower, I run diun these days. I have it set up to ping me in a discord channel when a docker update is available. Then, I can actually perform the update when I have time and attention to troubleshoot any issues that may come up.
Everybody’s pager went off in celebration!